To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SVM2CRM")

In most cases, you don't need to download the package archive at all.

SVM2CRM

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see SVM2CRM.

SVM2CRM: support vector machine for cis-regulatory elements detections

Bioconductor version: 3.1

Detection of cis-regulatory elements using svm implemented in LiblineaR.

Author: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Citation (from within R, enter citation("SVM2CRM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SVM2CRM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SVM2CRM")

 

PDF R Script Package
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine
Version 1.0.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL-3
Depends R (>= 3.2.0), LiblineaR, SVM2CRMdata
Imports AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SVM2CRM_1.0.0.tar.gz
Windows Binary SVM2CRM_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) SVM2CRM_1.0.0.tgz
Mac OS X 10.9 (Mavericks) SVM2CRM_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SVM2CRM/tree/release-3.1
Package Short Url http://bioconductor.org/packages/SVM2CRM/
Package Downloads Report Download Stats

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