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- Rbowtie
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie")
In most cases, you don't need to download the package archive at all.
Rbowtie
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Rbowtie.
R bowtie wrapper
Bioconductor version: 3.1
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.
Author: Florian Hahne, Anita Lerch, Michael B Stadler
Maintainer: Michael Stadler <michael.stadler at fmi.ch>
Citation (from within R,
enter citation("Rbowtie")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbowtie")
| R Script | An introduction to Rbowtie | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Alignment, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-1.0 | file LICENSE |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | parallel |
| SystemRequirements | GNU make |
| Enhances | |
| URL | |
| Depends On Me | QuasR |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rbowtie_1.8.0.tar.gz |
| Windows Binary | Rbowtie_1.8.0.zip (64-bit only) |
| Mac OS X 10.6 (Snow Leopard) | Rbowtie_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | Rbowtie_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rbowtie/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/Rbowtie/ |
| Package Downloads Report | Download Stats |
Documentation »
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