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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Polyfit")
In most cases, you don't need to download the package archive at all.
Polyfit
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Polyfit.
Add-on to DESeq to improve p-values and q-values
Bioconductor version: 3.1
Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.
Author: Conrad Burden
Maintainer: Conrad Burden <conrad.burden at anu.edu.au>
Citation (from within R,
enter citation("Polyfit")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Polyfit")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Polyfit")
| R Script | Polyfit | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | GPL (>= 3) |
| Depends | DESeq |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Polyfit_1.2.0.tar.gz |
| Windows Binary | Polyfit_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | Polyfit_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | Polyfit_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Polyfit/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/Polyfit/ |
| Package Downloads Report | Download Stats |
Documentation »
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