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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HybridMTest")
In most cases, you don't need to download the package archive at all.
HybridMTest
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This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see HybridMTest.
Hybrid Multiple Testing
Bioconductor version: 3.1
Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.
Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>
Maintainer: Demba Fofana <demba.fofana at stjude.org>
Citation (from within R,
enter citation("HybridMTest")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HybridMTest")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HybridMTest")
| R Script | Hybrid Multiple Testing | |
| Reference Manual |
Details
| biocViews | GeneExpression, Genetics, Microarray, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4 years) |
| License | GPL Version 2 or later |
| Depends | R (>= 2.9.0), Biobase, fdrtool, MASS, survival |
| Imports | stats |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HybridMTest_1.12.0.tar.gz |
| Windows Binary | HybridMTest_1.12.0.zip |
| Mac OS X 10.6 (Snow Leopard) | HybridMTest_1.12.0.tgz |
| Mac OS X 10.9 (Mavericks) | HybridMTest_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/HybridMTest/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/HybridMTest/ |
| Package Downloads Report | Download Stats |
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