To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: 3.1

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

PDF	R Script	GGtools: software for eQTL identification
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	GeneExpression, GeneticVariability, Genetics, SNP, Software
Version	5.4.0
In Bioconductor since	BioC 1.9 (R-2.4) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel
Imports	methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
LinkingTo
Suggests	GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608, multtest, aod, rmeta
SystemRequirements
Enhances	MatrixEQTL, Homo.sapiens, foreach, doParallel, gwascat
URL
Depends On Me	ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me	ceuhm3
Suggests Me	GGBase, gQTLBase, hmyriB36, ind1KG
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GGtools_5.4.0.tar.gz
Windows Binary	GGtools_5.4.0.zip
Mac OS X 10.6 (Snow Leopard)	GGtools_5.4.0.tgz
Mac OS X 10.9 (Mavericks)	GGtools_5.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GGtools/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/GGtools/
Package Downloads Report	Download Stats

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