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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DupChecker")
In most cases, you don't need to download the package archive at all.
DupChecker
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see DupChecker.
a package for checking high-throughput genomic data redundancy in meta-analysis
Bioconductor version: 3.1
Meta-analysis has become a popular approach for high-throughput genomic data analysis because it often can significantly increase power to detect biological signals or patterns in datasets. However, when using public-available databases for meta-analysis, duplication of samples is an often encountered problem, especially for gene expression data. Not removing duplicates would make study results questionable. We developed a Bioconductor package DupChecker that efficiently identifies duplicated samples by generating MD5 fingerprints for raw data.
Author: Quanhu Sheng, Yu Shyr, Xi Chen
Maintainer: "Quanhu SHENG" <shengqh at gmail.com>
Citation (from within R,
enter citation("DupChecker")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DupChecker")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DupChecker")
| R Script | Validate genomic data with "DupChecker" package | |
| Reference Manual |
Details
| biocViews | Preprocessing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | tools, R.utils, RCurl |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DupChecker_1.6.0.tar.gz |
| Windows Binary | DupChecker_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DupChecker_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | DupChecker_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DupChecker/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/DupChecker/ |
| Package Downloads Report | Download Stats |
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