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This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Category.

Category Analysis

Bioconductor version: 3.1

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("Category")):


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PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS


biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.34.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends methods, stats4, Matrix, BiocGenerics(>= 0.13.8), AnnotationDbi, Biobase, GO.db
Imports methods, utils, stats, stats4, BiocGenerics, graph, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6)
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
Depends On Me GOstats, meshr, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, GOstats, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA, qpgraph, RnBeads
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