To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAFE")

In most cases, you don't need to download the package archive at all.

CAFE

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: 3.1

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAFE")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

biocViews	GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version	1.4.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL-3
Depends	R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports	affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
LinkingTo
Suggests	RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	CAFE_1.4.0.tar.gz
Windows Binary	CAFE_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	CAFE_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	CAFE_1.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CAFE/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/CAFE/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: