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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BEclear")
In most cases, you don't need to download the package archive at all.
BEclear
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see BEclear.
Correct for batch effects in DNA methylation data
Bioconductor version: 3.1
Provides some functions to detect and correct for batch effects in DNA methylation data. The core function "BEclear" is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.
Author: Markus Merl, Ruslan Akulenko
Maintainer: Markus Merl <beclear.package at gmail.com>
Citation (from within R,
enter citation("BEclear")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BEclear")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BEclear")
| R Script | BEclear tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BatchEffect, DNAMethylation, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL-2 |
| Depends | snowfall, Matrix |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BEclear_1.0.0.tar.gz |
| Windows Binary | BEclear_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | BEclear_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | BEclear_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BEclear/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/BEclear/ |
| Package Downloads Report | Download Stats |
Documentation »
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