To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msdata")

In most cases, you don't need to download the package archive at all.

msdata

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: 3.0

Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzData, mzML and mz5. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msdata")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, MassSpectrometryData
Version 0.3.3
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests xcms
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MSnbase, mzR, RforProteomics, xcms
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source msdata_0.3.3.tar.gz
Windows Binary msdata_0.3.3.zip
Mac OS X 10.6 (Snow Leopard) msdata_0.3.3.tgz
Mac OS X 10.9 (Mavericks) msdata_0.3.3.tgz
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/msdata/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center