To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HSMMSingleCell")

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HSMMSingleCell

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see HSMMSingleCell.

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)

Bioconductor version: 3.0

Skeletal myoblasts undergo a well-characterized sequence of morphological and transcriptional changes during differentiation. In this experiment, primary human skeletal muscle myoblasts (HSMM) were expanded under high mitogen conditions (GM) and then differentiated by switching to low-mitogen media (DM). RNA-Seq libraries were sequenced from each of several hundred cells taken over a time-course of serum-induced differentiation. Between 49 and 77 cells were captured at each of four time points (0, 24, 48, 72 hours) following serum switch using the Fluidigm C1 microfluidic system. RNA from each cell was isolated and used to construct mRNA-Seq libraries, which were then sequenced to a depth of ~4 million reads per library, resulting in a complete gene expression profile for each cell.

Author: Cole Trapnell

Maintainer: Cole Trapnell <cole at broadinstitute.org>

Citation (from within R, enter citation("HSMMSingleCell")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HSMMSingleCell")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, HighThroughputSequencingData, RNAseqData
Version 1.0.0
License Artistic-2.0
Depends R (>= 2.10), VGAM (>= 0.9-5)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me monocle
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HSMMSingleCell_1.0.0.tar.gz
Windows Binary HSMMSingleCell_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) HSMMSingleCell_1.0.0.tgz
Mac OS X 10.9 (Mavericks) HSMMSingleCell_1.0.0.tgz
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/HSMMSingleCell/
Package Downloads Report Download Stats

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