To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FDb.FANTOM4.promoters.hg19")

In most cases, you don't need to download the package archive at all.

FDb.FANTOM4.promoters.hg19

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see FDb.FANTOM4.promoters.hg19.

Annotation package for FANTOM4 promoters identified from THP-1 cells

Bioconductor version: 3.0

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Citation (from within R, enter citation("FDb.FANTOM4.promoters.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FDb.FANTOM4.promoters.hg19")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Homo_sapiens
Version 1.0.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.7.22), Biostrings
Imports GenomicFeatures, AnnotationDbi
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary FDb.FANTOM4.promoters.hg19_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) FDb.FANTOM4.promoters.hg19_1.0.0.tgz
Mac OS X 10.9 (Mavericks) FDb.FANTOM4.promoters.hg19_1.0.0.tgz
Package Short Url http://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center