Last updated on 2024-10-28 03:56:00 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6-2 | 33.34 | 381.08 | 414.42 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.6-2 | 24.60 | 343.76 | 368.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.6-2 | 983.00 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6-2 | 933.99 | OK | |||
| r-devel-windows-x86_64 | 2.6-2 | 37.00 | 444.00 | 481.00 | OK | |
| r-patched-linux-x86_64 | 2.6-2 | 34.91 | 488.62 | 523.53 | OK | |
| r-release-linux-x86_64 | 2.6-2 | 35.76 | 492.22 | 527.98 | OK | |
| r-release-macos-arm64 | 2.6-2 | 205.00 | NOTE | |||
| r-release-macos-x86_64 | 2.6-2 | 332.00 | NOTE | |||
| r-release-windows-x86_64 | 2.6-2 | 38.00 | 432.00 | 470.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.6-2 | 197.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.6-2 | 341.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.6-2 | 49.00 | 603.00 | 652.00 | NOTE |
Version: 2.6-2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘DRomics_vignette.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29807 bytes
Input file size = 29921 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20387
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20387
Output IDAT size = 20387 bytes (9420 bytes decrease)
Output file size = 20465 bytes (9456 bytes = 31.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31545 bytes
Input file size = 31659 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23736
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23736
Output IDAT size = 23736 bytes (7809 bytes decrease)
Output file size = 23814 bytes (7845 bytes = 24.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23824 bytes
Input file size = 23926 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18004
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18004
Output IDAT size = 18004 bytes (5820 bytes decrease)
Output file size = 18082 bytes (5844 bytes = 24.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch11-1.png
672x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9081 bytes
Input file size = 9951 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8011
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8001
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8001
Output IDAT size = 8001 bytes (1080 bytes decrease)
Output file size = 8079 bytes (1872 bytes = 18.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch12-1.png
672x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8993 bytes
Input file size = 9860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7856
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7849
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7849
Output IDAT size = 7849 bytes (1144 bytes decrease)
Output file size = 7927 bytes (1933 bytes = 19.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch13-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17302 bytes
Input file size = 18184 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15959
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15959
Output IDAT size = 15959 bytes (1343 bytes decrease)
Output file size = 16037 bytes (2147 bytes = 11.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch15-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32353 bytes
Input file size = 32467 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27415
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27415
Output IDAT size = 27415 bytes (4938 bytes decrease)
Output file size = 27493 bytes (4974 bytes = 15.32% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/ch15-2.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16899 bytes
Input file size = 17001 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15223
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15212
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15212
Output IDAT size = 15212 bytes (1687 bytes decrease)
Output file size = 15290 bytes (1711 bytes = 10.06% decrease)
Quitting from lines 447-452 [ch16] (DRomics_vignette.Rmd)
Error: processing vignette 'DRomics_vignette.Rmd' failed with diagnostics:
could not find function "ComBat_seq"
--- failed re-building ‘DRomics_vignette.Rmd’
SUMMARY: processing the following file failed:
‘DRomics_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.6-2
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 2.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64